Top 12 Best 3PL Third Party Logistics Software in 2025

Effective management of supply chain operations requires efficiency and order. Third-party logistics (3PL) software is a program that helps organizations to outsource their transportation, warehousing, and inventory management among other services. This flexibility can result in higher efficiency and lower expenses of operations.

There are numerous types of 3PL software packages with special features that have been developed to meet specific business needs. Whether you need an app to use in your eCommerce, manufacturing, or enterprise-level logistics, knowing what options are available in the market can be rather helpful in choosing the best one for the job.

1 Ship with Mina - Best Overall

Ship With Mina is the best 3PL software solution with over 20 years of shipping experience and the latest technology to optimize global e-commerce order fulfillment. At the heart of Mina’s value proposition is its AI-based Pick & Pack solution for order fulfillment that eliminates manual order sorting mistakes and ensures that all orders are shipped on the same day. This capability provides you with a competitive edge in terms of quick and accurate deliveries.

Key Features:

  • Exclusive Shipping Lines: Benefit from competitive and dependable shipping options.
  • Global Fulfillment System: Designed for direct-to-consumer and B2B operations, ensuring you can scale effectively.
  • Quality Assurance: Their ISO 9001 certification reflects a serious commitment to maintaining high standards.

Mina approaches logistics in a very personalized manner and provides you with specific solutions and trends that meet your objectives. This improves on the existing operational efficiency and profitability. Striking a delicate balance between quality and cost allows you to offer high quality work at reasonable prices.

Seamless disruption affects the integration of e-commerce and disruption on the other hand enhances productivity. Whether you require flexible shipping options or professional product development services, working with Mina helps your organization to respond to market changes effectively and creatively.

2. ShipBob - Best Choice for E-commerce

Of all the options, ShipBob emerges as the most suitable due to its end-to-end warehousing, inventory management, and shipping services for e-commerce companies. Its global fulfillment network spans across the United States of America, Canada, Europe and Australia to allow you hold stock nearer to your customers. This geographical advantage can greatly reduce costs of freight and enhance delivery time.

Ranked at 9.0, ShipBob offers real-time tracking of the inventory and order status besides having a strong analytics section. It also connects with most of the e-commerce solutions including Shopify, WooCommerce and Amazon, to help you streamline your processes.

It should be noted that some customers have expressed concerns regarding the lack of information from the customer service as well as the issue of overselling during the onboarding process..

3. ShipHero - Ideal for Warehouse and Distribution

ShipHero is another tool that can be considered as your choice and it has 8.9 points for the efficient warehouse management that, in its turn, increases the accuracy of orders. The platform has done a great job in automation of the picking, packing and shipping processes to reduce mistakes and increase the rate of delivery.

Some of the features of the software include batch shipping, barcode scanning and real time inventory tracking. Features of customizable workflows and detailed reporting tools enable users to track shipment, inventory, COGS and expired inventory. Although some users have sometimes reported incorrect charges, the feature is quite reliable..

4. FishBowl - Ideal for Manufacturing Operations

FishBowl is a great product for small to mid-size 3PL companies that focus on manufacturing and distribution. It integrates features that improve manufacturing such as bill of materials (BOM) that can be customized, the tracking and management of production and a variety of manufacturing orders.

Key features include:

  • Barcode Scanning: Accurate tracking for inventory management.
  • Order Routing: Streamlined picking processes for efficiency.
  • Shipping Integration: Works seamlessly with FedEx and UPS.
  • Accounting Compatibility: Integrates with QuickBooks, though real-time transaction posting is unavailable.

FishBowl does have many effective features but be ready for some challenges when encountering the system’s functionalities. Furthermore, transaction postings may need to be entered manually or synchronized on a set schedule for QuickBooks connectivity.

5. ShipMonk - Optimal Choice for eCommerce Ventures

ShipMonk is excellent for eCommerce organizations as it provides inventory, order, shipping, and return solutions. It is a central order management platform that easily integrates with other sales platforms such as Amazon, Shopify, Instagram, and eBay.

Key features include:

  • Order Tracking: Monitor orders efficiently.
  • Inventory Management: Maintain stock levels across multiple sites.
  • Performance Reports: Generate insightful reports for better decision-making.

Also, the current stock updates, low stock alerts, and best-seller identification improve the operation effectiveness. The orders are directed to the most suitable fulfillment center the moment they come in. However, some people have mentioned issues with customer service, including rather slow responses, as well as delays with shipping and fulfillment.

6. Extensiv - Top eCommerce and Warehouse Integration Tool

Extensiv, formerly 3PL Central, is one of the most integrated and customizable solutions available on the market today. It can work effortlessly with other e-commerce channels like Amazon, Walmart, and Shopify, besides other marketplaces, and shipping carriers such as FedEx, UPS, and USPS.

Key features include:

  • Custom API and EDI Integrations: Tailored solutions to meet specific business needs.
  • Multi-Client Management: Enables 3PL providers to manage numerous clients efficiently with dedicated logins and dashboards.
  • Specialized Tracking: Includes unique functions such as FEFO (First Expired, First Out) for perishables and lot control.

A note to consider: Extensiv does not offer a free trial, so you cannot test the software before committing.

7. Körber - Ideal for Large Enterprises

Körber, which was formerly known as HighJump, is more relevant to organizations operating complex supply chains within the enterprise context. 

  • Adaptable Invoicing System: Simplifies billing processes.
  • EDI Connectivity: Enhances communication with trading partners.
  • Management of Value-Added Services: Supports pre-assembly and more.

The system performs well in areas such as automated material handling, cross docking, workforce management and advanced analytics. Its flexibility makes it suitable for the retail, manufacturing and third-party logistics industries.

Despite its advantages, users may face challenges due to a steep learning curve. The software's complexity can necessitate considerable internal expertise and training to implement and utilize its features effectively.

8. Deposco - Optimal Choice for Integrated Logistics Providers

What makes Deposco different from the rest is its flexibility. It has been developed for integrated logistics providers (ILPs). Its end-to-end solution integrates transport, warehouse, and order management solutions that allow for full tracking of inventory, customer service, and warehouse functioning.

Deposco also has a wealth of pre-built integrations that can help your operations, including connections with various e-commerce platforms, ERPs, and CRMs such as Etsy and Wayfair. API integration also enables the exchange of data between your systems and Deposco in real time meaning that inventory, shipping and orders details will be shared effortlessly.

Deposco is able to meet specialized customer requirements including complex shipping instructions and specific labeling needs. This capability assists you to retain certain key customers by providing specific services that suit their particular needs and wants.

9. Infoplus WMS - Ideal for Small 3PLs

Infoplus WMS has been developed for small and medium-sized 3PLs, online stores, and wholesalers. Its automation features and the ability to integrate with other systems create high operational performance. Key characteristics include:

  • Machine Learning: Optimizes picking methods, improving accuracy.
  • CartonizatiCustomizationps determine the best packing methods.
  • Barcode Scanning: Streamlines inventory management.

The software is integrated with several eCommerce marketplaces including eBay and ChannelAdvisor, accounting systems as well as shipping services such as DHL, UPS, and USPS. This integration helps in tracking inventory, processing orders, and managing finance.

The basic design does not in any way affect the functionality, which greatly enhances productivity and gives you better control of the supply chain. However, you have to understand that customization options may be limited and this can be problematic if your supply chain needs are rather specific.

10. Logiwa WMS - Robust Client Portals

Logiwa WMS offers some of the best features to create optimal client portal for your order management system. They provide easy link to important information on your orders, shipments, returns and inventory status of the products. Furthermore, you will be able to access more specific and detailed transaction information such as receipts and billing.

Featuring an industrial scanner compatible mobile application and supporting iOS and Android devices, Logiwa enables real time order monitoring. This feature can help your warehouse team to do the job of receiving, picking, packing, and shipping within the warehouse effectively.

During the evaluation of Logiwa WMS, the mobile interface proved to be user-friendly, allowing for smoother navigation and task completion. The system also supports the connection with more than 240 other web services, for example, QuickBooks Online, Shopify, or Xero. Note that pricing details necessitate a quote request from Logiwa.

11. Magaya - Ideal Choice for Freight Forwarding

Magaya Supply Chain has emerged as a strong logistics solution designed for freight forwarding business. It handles shipment for export, import and for the domestic market, with services ranging from ocean, air and ground shipping. It covers everything from the freight booking process right through to tracking purchase orders and handling customs paperwork.

Key features include:

  • Real-time visibility: Keep track of your shipments with the LiveTrack Plug-in, providing updates from any location.
  • Proof of delivery: Ensure accountability with documented evidence of delivery to the designated recipient.

Be aware that some users have reported issues when handling multiple packages within a single shipment, which could potentially affect performance.

12. WISE WMS - Optimal Solution for Cold Storage

WISE Warehouse Management System is tailored specifically for cold storage operations. 

Key features include:

  • Anniversary date billing
  • Kitting and repackaging
  • Barcoding and RFID technology for precise inventory management

The software improves the omnichannel fulfillment to meet the customer’s growing desire for faster delivery. It has features for billing frequencies for daily, weekly, monthly, quarterly, or yearly billing options.

WISE also works well with most shipping options like UPS and FedEx. However the system has no transportation management functionalities for tracking shipments which may be a disadvantage to 3PLs that require full shipment tracking.

What is 3PL Software?

Third party logistics (3PL) helps organizations in the logistics industry to manage large scale activities with enhanced efficiency, accountability and speed. This technology allows companies to optimize their supply chain and order fulfillment processes in cooperation with their partners.. Critical features of 3PL software include:

  • Inventory Management: Monitor stock levels and manage supplies efficiently.
  • Order Fulfillment: Automate the processing and shipping of orders.
  • Billing and Invoicing: Simplify financial transactions and recordkeeping.
  • Supply Chain Management: Optimize the flow of goods and services.
  • Customer Relationship Management (CRM): Enhance interactions with clients.
  • Warehouse Management Systems: Improve control and organization within storage facilities.

These systems can be part of the whole logistics systems and are suitable for use by companies of all sizes. They help in the identification and arrangement of goods in the supply chain to ensure that they are delivered on time.

Who Uses 3PL Software?

3PL software is most commonly used by third-party logistics providers, freight forwarders, brokers, warehousing and distribution firms. Companies that opt to outsource their logistics also use this software.

These tools are very useful in the management of the movement and control of goods across the globe. They offer tracking from the warehouse level all the way to the delivery vehicle thus increasing on efficiency and satisfaction of the customers. The right 3PL software can also handle the different needs of your clients, and this will be good for your business.

Top Benefits

1. Enhanced Warehouse Oversight and Inventory Management

Improved software is a smarter way of managing your warehouses to increase their overall productivity. It offers specific procedures for managing the incoming and outgoing flow of goods and for controlling inventory. You get accurate and timely information about your supply chain to avoid discrepancies in your inventory.

2. Optimized Labor Management

The software enables you to track and assess the performance of employees in relation to set standards. This feature is useful in preserving high output among the employees of the warehouse as it guarantees that operations are performed effectively. In this manner, you are able to increase workplace productivity by properly handling your employees.

3. Streamlined Operational Processes

Designing a tailored workflow in your 3PL system helps your team to work most effectively. This approach makes it easier for you to meet the unique needs of each customer and order placed hence faster processing, high order quality, and high levels of customer satisfaction.

4. Cost-effective, Swift, and Dependable Shipping

A key aspect of 3PL software is its efficiency in handling shipping logistics. It assists in determination of the cheapest shipping rates and also in tracking shipments. Moreover, it helps in kitting processes and makes sure that all shipping rules are being followed. Many solutions also come with reverse logistics features to help manage the return of products from customers.

5. Precise Billing Processes

3PL software incorporates invoicing features that will help you seize every revenue stream. It streamlines the billing process while giving you an overview of your sales and helping you meet various billing complications. This simplification of financial procedures is crucial in order to achieve the highest possible profits.

6. Digital Document Management

The software manages how documents are dealt with in your business thus enabling electronic storage and retrieval within your operations. When it is impossible to avoid using physical paperwork, the ability to scan and share documents quickly will improve their availability within your organization.

7. Improved Fleet and Transportation Oversight

Another thing that is usually found in 3PL software is the transportation and fleet management capabilities. These features are additional to a full transportation management system to help you manage transport planning and execution. The software also provide communication with brokers and carriers in order to manage the logistics.

8. Continuous Access to Data

A cloud-based 3PL software will also provide you with real time information as you can access it at any time of the day. In the case of customizable online portals you are able to get information from any location and at any time that is suitable for you hence enabling you make right decisions that can help support your operations.

Selecting the Right 3PL Software for Your Needs

Choosing the most suitable 3PL software hinges on the size and complexity of your operations.

  • For Small Businesses: Search for a fully integrated management solution that will give you a full logistics solution without having to look for other options. This way, the need for customizations and other system integrations is limited, especially if you opt for an Internet-based system.
  • For Medium-Sized Businesses: Consider software with advanced features like RFID tracking. This technology allows for the automatic tracking of products, tools, and vehicles via wireless tags and scanners.
  • For Large Enterprises: Pay attention to the software that can easily interconnect with the existing systems you are using. This will guarantee a continuous performance and efficient order processing without interrupting your normal business flow.

Addressing Key Challenges

Third-party logistics frequently face critical challenges related to labor and space. To minimize operational costs, you must enhance operational efficiency with actionable insights.

  • Software Solutions:Leverage technology to ensure you have full control or your stock from the time it is received up to the time it is issued. Real-time tracking is useful to help you manage your resources and space better as well as reducing on wastage.
  • Warehouse Management: Put in place proper mechanisms to effect proper staff placement and performance assessment. This guarantees that your team has all it needs to meet the desired targets in good time..
  • Streamlined Order Management: With Ship with Mina, accessing multiple channels and carriers from a single platform simplifies your order management processes.

Market Trends

The logistics sector is witnessing significant advancements in 3PL software, primarily driven by the need for greater efficiency. Key trends shaping this market include:

  • Mobile and Cloud Solutions: You no longer need to be onsite to manage logistics operations. Mobile apps and cloud-based platforms allow you to access and oversee workflows from any location.
  • Artificial Intelligence:Some of the advanced wireless technologies like IoT sensors and RFID tracking make the automatic tracking of inventories possible. You can take advantage of intelligent applications that use data analytics to predict demand and provide recommendations for equipment maintenance.

These innovations are revolutionizing the workings of the logistics companies, flexibility and data analysis being at the forefront. Such technologies can be put into use to enhance the performance and flexibility of operations in the light of market dynamics.

Top 12 Best 3PL Third Party Logistics Software in 2025

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